Trainees will present their research in three formats: (1) Plenary and (2) semi-plenary paper sessions and (3) poster sessions. Abstracts were due to the NLM no later than 5 PM EDT on April 6, 2007 (by electronic mail to Christine Ireland at irelanc@mail.nih.gov).
NLM Informatics Training Conference 2007
Stanford University
June 26-27, 2007 |
| Tuesday, June 26 |
|
| 6:30-7:30 |
Buses loop from hotels to campus |
| 7:00-7:45 |
Registration, Poster Setup, Continental Breakfast (Hewlett Teaching Center - Outside) |
7:45 – 7:50 |
Welcome (Dr. Russ Altman) – (Hewlett Teaching Center, Room 200) |
7:50 – 8:10 |
NLM Director's Remarks (Dr. Donald A.B. Lindberg) |
8:10 – 8:25 |
Introductions of Training Directors and Trainees, Overview of Program (Dr. Valerie Florance) |
| 8:30 – 10:10 |
Plenary Paper Session # 1 – Key Topics in Informatics – 5 papers (Session Chair: Robert Greenes)
- Clinical/Public Health Informatics: Understanding Workflow and Information Flow in Chronic Disease Care - Kim Unertl, Vanderbilt University
- Bioinformatics: Automated Function Prediction: A Comparison of SeqFEATURE to Other Methods and Applications to Structural Genomics - Shirley Wu, Stanford University
- Translational: A Systems-Based, Computational Approach to Link Phenotypes with Causal Genetic Events - Kartik Mani, Columbia University
- Modeling: Building 3D Chemical Structures from 2D Information - Ryan Benz, UC, Irvine
- Information Retrieval//Information Studies: Sharing Personal Health Information within Social Networks - Meredith Skeels, University of Washington
|
10:10 – 10:30 |
Break (Posters Unattended) (Hewlett Teaching Center - Outside) |
10:30 – 11:30 |
Parallel Paper Sessions
Session A – Health Care Quality - 3 papers (Herrin 175)
(Session Chair: Charles Caldwell)
- The Impact of Pediatric Adverse Events on the Cost-Effectiveness of Oseltamivir - Tara Lavelle, Harvard University
- Usage and Perceptions of Athena-Hypertension DSS by Primary Care Physicians - Martha Michel, Veterans Administration
- Adherence to Home-Monitoring and Mortality in Post-Lung Transplantation Patients - Hojung Yoon, University of Minnesota
Session B Tools & Techniques, Part 1 – 3 papers (Packard 101)
(Session Chair: Peter Tarczy-Hornoch)
- Content Validity of Obtrusiveness Model of Home Telehealth Technologies - Brian Hensel, University of Missouri-Columbia
- Evaluation of VA/KP Subset of SNOMED for E-Prescription Clinical Decision Support – Surendranath Mantena, Regenstrief Institute
- Cryptographic Accuracy Annotations for Electronically Exchanged Personal Health Information - David Haight, University of Wisconsin
Session C – Translational Informatics – 3 papers (Hewlett 200)
(Session Chair: Joyce Mitchell)
- The Biofluidome: Determination and Quantification of Functional Peripheral Proxies - Gil Alterovitz, Massachusetts Institute of Technology
- Genome-Wide Linkage Analyses for Asthma Predisposition Loci in Extended Pedigrees - Craig Teerlink, University of Utah
- Detecting Natural Selection Across Populations - Eleanne Solorzano, Yale University
|
| 11:30 – 1:00 |
Lunch & Informal Networking (Hewlett Teaching Center - Outside) |
1:00 – 2:00 |
- Poster Session - Attended
- Executive Session of Training Directors (School of Education, Room 206)
|
| 2:00-3:40 |
Plenary Paper Session – Health Care Informatics – 5 papers (Hewlett Room 200) (Session Chair: William Tierney)
- The Cost of Adverse Drug Events in Ambulatory Care – Matthew Burton, Regenstrief Institute
- Content-Based Image Retrieval of Malignant Brain Tumors – Shishir Dube, University of California, Los Angeles
- The Effects of Hands Free Communication Devices: Communication Changes Among Nurses, Nurse Managers, and IT Staff - Joshua Richardson, Oregon Health & Science University
- The Available Health Record is Often Deficient - But Can We Work with What We Have? – Andrew Brunskill, Veterans Administration
- Improving Diabetes Population Management Efficiency with an Informatics Solution – Adrian Zai, Massachusetts General Hospital
|
3:40 – 4:00 |
Break (Posters Unattended) |
4:00 – 5:30 |
Stanford Showcase: Clark Center |
6:00 – 9:00 |
Picnic @ New Guinea Garden - Will be outside – Please bring a sweater! |
| Wednesday, June 27 |
|
| 7:00 – 7:50 |
Training Directors’ Breakfast Session (Sheraton Hotel) |
| 7:00 – 8:00 |
Continental Breakfast (Hewlett Teaching Center - Outside) |
8:00 – 9:20 |
Plenary Paper Session –Bioinformatics (4 papers) (Hewlett Room 200) (Session Chair: Russ Altman)
- Counterion Localization Caused by DNA Supercoiling Affects Type II Topoisomerase Recognition - Graham Randall, Baylor College of Medicine
- Statistical Analysis of the Genomic Distribution and Correlation of Regulatory Elements in the ENCODE Regions – Zhengdong Zhang, Yale University
- Effects of Aging on Mouse Transcriptional Networks – Lucinda Southworth, Stanford University
- Peptide Identification in Whole-Sample Mass Spectrometry Proteomics - Richard Pelikan, University of Pittsburgh
|
9:20 – 10:20 |
Parallel Paper Sessions
Session D – Tools & Techniques, Part 2 - 3 papers ( Packard 101)
(Session Chair: G. Anthony Gorry)
- Formal Usability Testing Finds New Problems for Novice Users of Pediatric Portals – Maria Britto, Cincinnati Children's Hospital Medical Center
- A Combined Qualitative Method for Testing an Interactive Risk Communication Tool – Jessica Ancker, Columbia University
- RF++: Robust Random Forest for Clustered Data Classification - Yuliya Karpievitch, Medical University of South Carolina
Session E – Consumer/Public Health Informatics - 3 papers (Herrin 175) (Session Chair: Cynthia Gadd)
- Forecasting Emergency Department Crowding by Discrete Event Simulation - Nathan Hoot, Vanderbilt University
- Towards Electronic Health Information Exchanges between Clinical Care and Public Health - Patricia Swartz, Johns Hopkins University
- Factual Versus Narrative Messaging: Different Modalities and Personal Involvement. Looking for the Best Strategy of Persuasion. The Weight Loss and College Drinking Examples - Julia Braverman, Boston University
Session F – Knowledge Discovery & Summarization – 3 papers (Hewlett 200) (Session Chair: Alex Bui)
- Identification and Extraction of Functional Protein Point Mutation Effects in Biomedical Literature - Lawrence Lee, University of California, San Francisco
- Identifying Anatomical Phrases in Clinical Reports using Shallow Semantic Parsing Methods - Vijay Bashyam, University of California, Los Angeles
- Automatic Summarization of Mouse Gene Information by Clustering and Sentence Extraction from MEDLINE Abstracts - Jianji Yang, Oregon Health & Science University
|
10:20 – 10:40 |
Break (Posters Unattended) |
10:40 – 12:20 |
Plenary Paper Session: Modeling – 5 papers (Hewlett 200) (Session Chair: George Phillips)
- Using Mathematical Models to Identify Novel JNK Substrates - Thomas Whisenant, UC, Irvine
- A Bayesian Model for Modeling Overlapping Gene Expression Modules using Latent Variables - Thomas Asbury, Medical University of South Carolina
- Closing the Gap in Homology Modeling and its Application to Drug Development - Jeff Reneker, University of Missouri-Columbia
- Statistical Relational Learning for Biomedical Domains - Jesse Davis, University of Wisconsin
- Use of Classification Models Based on Usage Data for the Selection of Infobutton Resources – Guilherme Del Fiol, University of Utah
|
12:20 – 1:20 |
- Lunch & Informal Networking
- Grants Administration Workshop (School of Education, Room 314)
|
1:00 – 1:20 |
Poster Session – Attended (Hewlett Teaching Center – Outside) |
| 1:20 – 3:00 |
Plenary Paper Session: Information Retrieval /Information Studies – 5 papers (Hewlett 200)
(Session Chair: William Hersh)
- Contextual Analysis of Variation and Quality in Human-Curated Gene Ontology Annotations - W. John MacMullen, University of North Carolina, Chapel Hill
- Adoption of Innovation in Practice: An In-Depth Study of Heparin Dosing by Residents – Prudence Dalrymple, Johns Hopkins University
- A Study of Experimental Information Management in Biomedical Research – Nicholas Anderson, University of Washington
- Sequential Search Result Refinement of the Medical Literature – Len Tanaka, University of Texas School of Health Information Sciences at Houston
- Sharing Detailed Research Data is Associated with Increased Citation Rate - Heather Piwowar, University of Pittsburgh
|
3:00 – 3:30 |
Closing Session (Russ Altman) |